{
"_id": "6a0f78a0acfb0bcc41c624ed",
"Package": "cosmicsig",
"Title": "Mutational Signatures from COSMIC (Catalogue of Somatic\nMutations in Cancer)",
"Version": "1.3.1",
"Authors@R": "c(person(given = \"Steven\",\nfamily = \"Rozen\",\nrole = c(\"aut\", \"cre\"),\nemail = \"steverozen@pm.me\",\ncomment = c(ORCID = \"0000-0002-4288-0056\")),\nperson(given = \"Nanhai\",\nfamily = \"Jiang\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-4974-2753\")))",
"Description": "A data package with 2 main package variables: 'signature'\nand 'etiology'. The 'signature' variable contains the latest\nmutational signature profiles released on COSMIC\n for 3 mutation types:\n* Single base substitutions in the context of preceding and\nfollowing bases, * Doublet base substitutions, and * Small\ninsertions and deletions. 'cosmicsig' stands for COSMIC\nsignatures. Please run ?'cosmicsig' for more information.",
"License": "GPL-3",
"URL": "https://github.com/Rozen-Lab/cosmicsig",
"BugReports": "https://github.com/Rozen-Lab/cosmicsig/issues",
"Language": "en-US",
"Encoding": "UTF-8",
"LazyData": "true",
"Roxygen": "list(markdown = TRUE)",
"RoxygenNote": "7.3.3",
"Config/testthat/edition": "3",
"Repository": "https://rozen-lab.r-universe.dev",
"Date/Publication": "2026-04-21 00:01:42 UTC",
"RemoteUrl": "https://github.com/rozen-lab/cosmicsig",
"RemoteRef": "HEAD",
"RemoteSha": "bfaadaab4484a3b6f4bb74cd1aaee1c0eb745562",
"NeedsCompilation": "no",
"Packaged": {
"Date": "2026-05-21 05:51:05 UTC",
"User": "root"
},
"Author": "Steven Rozen [aut, cre] (ORCID:\n),\nNanhai Jiang [aut] (ORCID: )",
"Maintainer": "Steven Rozen ",
"MD5sum": "07030d736209f54889efdcb3c2f2b2a3",
"_user": "rozen-lab",
"_type": "src",
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"_published": "2026-05-21T21:26:56.268Z",
"_distro": "noble",
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"author": "Steven G. Rozen ",
"committer": "Steven G. Rozen ",
"message": "v1.3.1: use \\doi{} macro for CRAN resubmission\n\nCRAN declined 1.3.0 because the Alexandrov et al. 2020 reference on the\npackage help page used \\href{https://doi.org/...}{doi:...} rather than\nthe \\doi{} Rd macro. Switch to \\doi{10.1038/s41586-020-1943-3}, bump\nversion to 1.3.1, update NEWS and cran-comments accordingly.\n\nLocal R CMD check --as-cran with incoming feasibility enabled: 0/0/0.\n\nCo-Authored-By: Claude Opus 4.7 (1M context) \n",
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"email": "steverozen@pm.me",
"login": "steverozen",
"description": "",
"uuid": 30855154,
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},
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"role": "Suggests"
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],
"_owner": "rozen-lab",
"_selfowned": true,
"_usedby": 0,
"_updates": [
{
"week": "2026-17",
"n": 4
}
],
"_tags": [
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"name": "v1.3.0",
"date": "2026-04-20"
}
],
"_stars": 1,
"_contributors": [
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"uuid": 44010028
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],
"_userbio": {
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"type": "organization",
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"source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cosmicsig"
},
"_devurl": "https://github.com/rozen-lab/cosmicsig",
"_searchresults": 35,
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"_assets": [
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"_homeurl": "https://github.com/rozen-lab/cosmicsig",
"_realowner": "rozen-lab",
"_cranurl": true,
"_releases": [
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},
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},
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],
"_exports": [
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"possible_artifacts",
"rare_signatures",
"SBS96_ID_to_SBS192_ID"
],
"_datasets": [
{
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"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.0 - May 2019)",
"object": "COSMIC_v3.0",
"class": [
"list"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "COSMIC_v3.1",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.1 - June 2020)",
"object": "COSMIC_v3.1",
"class": [
"list"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "COSMIC_v3.2",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.2 - March 2021)",
"object": "COSMIC_v3.2",
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"list"
],
"fields": [],
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"tojson": true
},
{
"name": "COSMIC_v3.3",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.3 - June 2022)",
"object": "COSMIC_v3.3",
"class": [
"list"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "COSMIC_v3.4",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.4 - October 2023)",
"object": "COSMIC_v3.4",
"class": [
"list"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "COSMIC_v3.5",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.5 - November 2025)",
"object": "COSMIC_v3.5",
"class": [
"list"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "etiology",
"title": "List of mutational signatures' proposed etiology summarized from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.5 - November 2025)",
"object": "etiology",
"class": [
"list"
],
"fields": [],
"table": false,
"tojson": true
},
{
"name": "signature",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.5 - November 2025)",
"object": "signature",
"class": [
"list"
],
"fields": [],
"table": false,
"tojson": true
}
],
"_help": [
{
"page": "COSMIC_v3.0",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.0 - May 2019)",
"topics": [
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]
},
{
"page": "COSMIC_v3.1",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.1 - June 2020)",
"topics": [
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]
},
{
"page": "COSMIC_v3.2",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.2 - March 2021)",
"topics": [
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]
},
{
"page": "COSMIC_v3.3",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.3 - June 2022)",
"topics": [
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]
},
{
"page": "COSMIC_v3.4",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.4 - October 2023)",
"topics": [
"COSMIC_v3.4"
]
},
{
"page": "COSMIC_v3.5",
"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.5 - November 2025)",
"topics": [
"COSMIC_v3.5"
]
},
{
"page": "cosmicsig",
"title": "cosmicsig: A package of mutational signatures from COSMIC (Catalogue Of Somatic Mutations In Cancer) .",
"topics": [
"cosmicsig-package",
"cosmicsig"
]
},
{
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"title": "List of mutational signatures' proposed etiology summarized from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.5 - November 2025)",
"topics": [
"etiology"
]
},
{
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"title": "Get the proposed etiology of mutational signatures.",
"topics": [
"get_etiology"
]
},
{
"page": "possible_artifacts",
"title": "Return a character vector of the names of possible signature artifacts",
"topics": [
"possible_artifacts"
]
},
{
"page": "rare_signatures",
"title": "Return a character vector of the names of rare SBS96 signatures",
"topics": [
"rare_signatures"
]
},
{
"page": "SBS96_ID_to_SBS192_ID",
"title": "Translate SBS96 signature IDs to SBS192 signature IDs by adding \"-E\" if necessary",
"topics": [
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]
},
{
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"title": "Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.5 - November 2025)",
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]
}
],
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