Package: cosmicsig 1.1.1
Steven Rozen
cosmicsig: Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)
A data package with 2 main package variables: 'signature' and 'etiology'. The 'signature' variable contains the latest mutational signature profiles released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 3 mutation types: * Single base substitutions in the context of preceding and following bases, * Doublet base substitutions, and * Small insertions and deletions. The 'etiology' variable provides the known or hypothesized causes of signatures. 'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more information.
Authors:
cosmicsig_1.1.1.tar.gz
cosmicsig_1.1.1.zip(r-4.5)cosmicsig_1.1.1.zip(r-4.4)cosmicsig_1.1.1.zip(r-4.3)
cosmicsig_1.1.1.tgz(r-4.4-any)cosmicsig_1.1.1.tgz(r-4.3-any)
cosmicsig_1.1.1.tar.gz(r-4.5-noble)cosmicsig_1.1.1.tar.gz(r-4.4-noble)
cosmicsig_1.1.1.tgz(r-4.4-emscripten)cosmicsig_1.1.1.tgz(r-4.3-emscripten)
cosmicsig.pdf |cosmicsig.html✨
cosmicsig/json (API)
NEWS
| # Install 'cosmicsig' in R: |
| install.packages('cosmicsig', repos = c('https://rozen-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rozen-lab/cosmicsig/issues
- COSMIC_v3.0 - Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer
- COSMIC_v3.1 - Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer
- COSMIC_v3.2 - Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer
- COSMIC_v3.3 - Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer
- etiology - List of mutational signatures's proposed etiology summarized from COSMIC, Catalogue Of Somatic Mutations In Cancer
- signature - Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer
Last updated 1 years agofrom:263960e1a9. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 12 2024 |
| R-4.5-win | OK | Nov 12 2024 |
| R-4.5-linux | OK | Nov 12 2024 |
| R-4.4-win | OK | Nov 12 2024 |
| R-4.4-mac | OK | Nov 12 2024 |
| R-4.3-win | OK | Nov 12 2024 |
| R-4.3-mac | OK | Nov 12 2024 |
Exports:get_etiologypossible_artifactsrare_signaturesSBS96_ID_to_SBS192_ID
Dependencies:
