Package: mSigTools 1.0.7

Steven Rozen

mSigTools: Mutational Signature Analysis Tools

Utility functions for mutational signature analysis as described in Alexandrov, L. B. (2020) <doi:10.1038/s41586-020-1943-3>. This package provides two groups of functions. One is for dealing with mutational signature "exposures" (i.e. the counts of mutations in a sample that are due to each mutational signature). The other group of functions is for matching or comparing sets of mutational signatures. 'mSigTools' stands for mutational Signature analysis Tools.

Authors:Steven Rozen [aut, cre], Nanhai Jiang [aut]

mSigTools_1.0.7.tar.gz
mSigTools_1.0.7.zip(r-4.5)mSigTools_1.0.7.zip(r-4.4)mSigTools_1.0.7.zip(r-4.3)
mSigTools_1.0.7.tgz(r-4.4-any)mSigTools_1.0.7.tgz(r-4.3-any)
mSigTools_1.0.7.tar.gz(r-4.5-noble)mSigTools_1.0.7.tar.gz(r-4.4-noble)
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mSigTools.pdf |mSigTools.html✨
mSigTools/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/rozen-lab/msigtools/issues

On CRAN:

10 exports 2 stars 0.93 score 8 dependencies 10 scripts 174 downloads

Last updated 2 years agofrom:48994a13b8. Checks:OK: 5 ERROR: 2. Indexed: yes.

Exports:find_best_reconstruction_QPmatch_two_sig_setsoptimize_exposure_QPplot_exposureplot_exposure_to_pdfread_exposuresig_dist_matrixsort_exposureTP_FP_FN_avg_simwrite_exposure

Dependencies:clueclusterKernSmoothphilentropypoormanquadprogRcppsets