Package: mSigTools 1.0.7
Steven Rozen
mSigTools: Mutational Signature Analysis Tools
Utility functions for mutational signature analysis as described in Alexandrov, L. B. (2020) <doi:10.1038/s41586-020-1943-3>. This package provides two groups of functions. One is for dealing with mutational signature "exposures" (i.e. the counts of mutations in a sample that are due to each mutational signature). The other group of functions is for matching or comparing sets of mutational signatures. 'mSigTools' stands for mutational Signature analysis Tools.
Authors:
mSigTools_1.0.7.tar.gz
mSigTools_1.0.7.zip(r-4.5)mSigTools_1.0.7.zip(r-4.4)mSigTools_1.0.7.zip(r-4.3)
mSigTools_1.0.7.tgz(r-4.4-any)mSigTools_1.0.7.tgz(r-4.3-any)
mSigTools_1.0.7.tar.gz(r-4.5-noble)mSigTools_1.0.7.tar.gz(r-4.4-noble)
mSigTools_1.0.7.tgz(r-4.4-emscripten)mSigTools_1.0.7.tgz(r-4.3-emscripten)
mSigTools.pdf |mSigTools.html✨
mSigTools/json (API)
NEWS
| # Install 'mSigTools' in R: |
| install.packages('mSigTools', repos = c('https://rozen-lab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rozen-lab/msigtools/issues
Last updated 2 years agofrom:48994a13b8. Checks:OK: 6 ERROR: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 06 2024 |
| R-4.5-win | OK | Nov 06 2024 |
| R-4.5-linux | OK | Nov 06 2024 |
| R-4.4-win | OK | Nov 06 2024 |
| R-4.4-mac | OK | Nov 06 2024 |
| R-4.3-win | OK | Nov 06 2024 |
| R-4.3-mac | ERROR | Nov 06 2024 |
Exports:find_best_reconstruction_QPmatch_two_sig_setsoptimize_exposure_QPplot_exposureplot_exposure_to_pdfread_exposuresig_dist_matrixsort_exposureTP_FP_FN_avg_simwrite_exposure
Dependencies:clueclusterKernSmoothphilentropypoormanquadprogRcppsets
