Package: mSigTools 1.0.8

Steven Rozen

mSigTools: Mutational Signature Analysis Tools

Utility functions for mutational signature analysis as described in Alexandrov, L. B. (2020) <doi:10.1038/s41586-020-1943-3>. This package provides two groups of functions. One is for dealing with mutational signature "exposures" (i.e. the counts of mutations in a sample that are due to each mutational signature). The other group of functions is for matching or comparing sets of mutational signatures. 'mSigTools' stands for mutational Signature analysis Tools.

Authors:Steven Rozen [aut, cre], Nanhai Jiang [aut]

mSigTools_1.0.8.tar.gz
mSigTools_1.0.8.zip(r-4.7-any)mSigTools_1.0.8.zip(r-4.6-any)mSigTools_1.0.8.zip(r-4.5-any)
mSigTools_1.0.8.tgz(r-4.6-any)mSigTools_1.0.8.tgz(r-4.5-any)
mSigTools_1.0.8.tar.gz(r-4.7-any)mSigTools_1.0.8.tar.gz(r-4.6-any)
mSigTools_1.0.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mSigTools/json (API)

# Install 'mSigTools' in R:
install.packages('mSigTools', repos = c('https://rozen-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rozen-lab/msigtools/issues

On CRAN:

Conda:

3.20 score 2 stars 16 scripts 289 downloads 10 exports 9 dependencies

Last updated from:49ca85b011. Checks:2 NOTE, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE119
source / vignettesOK190
linux-releaseOK131
macos-releaseOK154
macos-oldrelOK204
windows-develNOTE81
windows-releaseOK74
windows-oldrelOK97
wasm-releaseOK119

Exports:find_best_reconstruction_QPmatch_two_sig_setsoptimize_exposure_QPplot_exposureplot_exposure_to_pdfread_exposuresig_dist_matrixsort_exposureTP_FP_FN_avg_simwrite_exposure

Dependencies:clueclusterKernSmoothphilentropypoormanquadprogRcppRcppParallelsets